AT3G09840 (CDC48A, CDC48, ATCDC48)


Aliases : CDC48A, CDC48, ATCDC48

Description : cell division cycle 48


Gene families : OG0000169 (Archaeplastida) Phylogenetic Tree(s): OG0000169_tree ,
OG_05_0001221 (LandPlants) Phylogenetic Tree(s): OG_05_0001221_tree ,
OG_06_0001614 (SeedPlants) Phylogenetic Tree(s): OG_06_0001614_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G09840
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021463.10 No alias Cell division control protein 48 homolog D... 0.03 Archaeplastida
Cpa|evm.model.tig00021463.11 No alias Cell division control protein 48 homolog A... 0.02 Archaeplastida
Gb_24470 No alias platform ATPase (CDC48) 0.03 Archaeplastida
LOC_Os04g52690.3 No alias component Pex6 of Pex1-Pex6 subcomplex 0.04 Archaeplastida
Mp2g12350.1 No alias Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005635 nuclear envelope IDA Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005819 spindle IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0009524 phragmoplast IDA Interproscan
BP GO:0009846 pollen germination IMP Interproscan
BP GO:0009860 pollen tube growth IMP Interproscan
BP GO:0016310 phosphorylation IDA Interproscan
BP GO:0016310 phosphorylation RCA Interproscan
MF GO:0016887 ATPase activity ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042742 defense response to bacterium RCA Interproscan
MF GO:0042802 identical protein binding IPI Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
BP GO:0046686 response to cadmium ion RCA Interproscan
CC GO:0048046 apoplast IDA Interproscan
BP GO:0051301 cell division IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002218 activation of innate immune response IEP Neighborhood
BP GO:0002253 activation of immune response IEP Neighborhood
BP GO:0002679 respiratory burst involved in defense response IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
CC GO:0005652 nuclear lamina IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0006892 post-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006896 Golgi to vacuole transport IEP Neighborhood
BP GO:0006997 nucleus organization IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:0009873 ethylene-activated signaling pathway IEP Neighborhood
BP GO:0009911 positive regulation of flower development IEP Neighborhood
BP GO:0010071 root meristem specification IEP Neighborhood
BP GO:0010078 maintenance of root meristem identity IEP Neighborhood
BP GO:0010099 regulation of photomorphogenesis IEP Neighborhood
MF GO:0010178 IAA-amino acid conjugate hydrolase activity IEP Neighborhood
MF GO:0010179 IAA-Ala conjugate hydrolase activity IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015804 neutral amino acid transport IEP Neighborhood
BP GO:0015824 proline transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0016032 viral process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
MF GO:0019901 protein kinase binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0031176 endo-1,4-beta-xylanase activity IEP Neighborhood
CC GO:0034399 nuclear periphery IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0040011 locomotion IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
MF GO:0043424 protein histidine kinase binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044000 movement in host IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044403 symbiont process IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0044766 multi-organism transport IEP Neighborhood
BP GO:0045730 respiratory burst IEP Neighborhood
BP GO:0046739 transport of virus in multicellular host IEP Neighborhood
BP GO:0046740 transport of virus in host, cell to cell IEP Neighborhood
BP GO:0046794 transport of virus IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051814 movement in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052126 movement in host environment IEP Neighborhood
BP GO:0052192 movement in environment of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080022 primary root development IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097599 xylanase activity IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1902579 multi-organism localization IEP Neighborhood
BP GO:1902586 multi-organism intercellular transport IEP Neighborhood
BP GO:2000030 regulation of response to red or far red light IEP Neighborhood
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 131 194
IPR003959 ATPase_AAA_core 244 373
IPR003959 ATPase_AAA_core 517 651
IPR003338 CDC4_N-term_subdom 29 110
No external refs found!