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  5. Zm00001e003219_P001

Zm00001e003219_P001


Description : RNA helicase (PMH)


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0000974 (LandPlants) Phylogenetic Tree(s): OG_05_0000974_tree ,
OG_06_0003526 (SeedPlants) Phylogenetic Tree(s): OG_06_0003526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003219_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00191130 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 Archaeplastida
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.04 Archaeplastida
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 Archaeplastida
Cpa|evm.model.tig00000093.151 No alias DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.01 Archaeplastida
Cre02.g118300 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
GSVIVT01000821001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_10087 No alias DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa... 0.03 Archaeplastida
Gb_39948 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
LOC_Os12g41715.1 No alias RNA helicase (PMH) 0.06 Archaeplastida
Smo10677 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Smo150370 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
Smo99603 No alias DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 Archaeplastida
Solyc07g044760.3.1 No alias RNA helicase (PMH) 0.03 Archaeplastida
Solyc12g006320.3.1 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e011716_P001 No alias RH3 plastidial RNA basal splicing factor 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 118 286
IPR001650 Helicase_C 323 432
No external refs found!