Zm00001e003591_P003

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0005597 (LandPlants) Phylogenetic Tree(s): OG_05_0005597_tree ,
OG_06_0002193 (SeedPlants) Phylogenetic Tree(s): OG_06_0002193_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e003591_P003
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.04	Archaeplastida
GSVIVT01004942001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01019566001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01023149001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01037136001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
Gb_23186	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_33804	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os02g35140.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_10121946g0020	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_55076g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_566086g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
Mp1g07070.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
Pp3c16_6100V3.1	No alias	auxin response factor 1	0.02	Archaeplastida
Pp3c1_14480V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Smo181406	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Solyc01g103050.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc05g056040.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e006640_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e030325_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0008272	sulfate transport	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	131	232
IPR010525	Auxin_resp	257	340
IPR033389	AUX/IAA_dom	960	1052

External Links

No external refs found!

Zm00001e003591_P003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation