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Description : rRNA processing factor (IRP1)
Gene families : OG0002145 (Archaeplastida) Phylogenetic Tree(s): OG0002145_tree ,
OG_05_0001796 (LandPlants) Phylogenetic Tree(s): OG_05_0001796_tree ,
OG_06_0001403 (SeedPlants) Phylogenetic Tree(s): OG_06_0001403_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e003640_P002 | |
| Cluster | HCCA: Cluster_328 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01032539001 | No alias | No description available | 0.02 | Archaeplastida | |
| LOC_Os04g30910.1 | No alias | rRNA processing factor (IRP1) | 0.06 | Archaeplastida | |
| LOC_Os08g41480.1 | No alias | rRNA processing factor (IRP1) | 0.03 | Archaeplastida | |
| Smo270990 | No alias | No description available | 0.04 | Archaeplastida | |
| Solyc05g006320.4.1 | No alias | rRNA processing factor (IRP1) | 0.03 | Archaeplastida | |
| Zm00001e007876_P004 | No alias | rRNA processing factor (IRP1) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
| MF | GO:0003909 | DNA ligase activity | IEP | Neighborhood |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006281 | DNA repair | IEP | Neighborhood |
| BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
| BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
| MF | GO:0008483 | transaminase activity | IEP | Neighborhood |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Neighborhood |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
| BP | GO:0036297 | interstrand cross-link repair | IEP | Neighborhood |
| MF | GO:0042393 | histone binding | IEP | Neighborhood |
| CC | GO:0043240 | Fanconi anaemia nuclear complex | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |