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  5. Zm00001e003897_P001

Zm00001e003897_P001


Description : component psRPS4 of small ribosomal subunit proteome


Gene families : OG0003680 (Archaeplastida) Phylogenetic Tree(s): OG0003680_tree ,
OG_05_0003482 (LandPlants) Phylogenetic Tree(s): OG_05_0003482_tree ,
OG_06_0002285 (SeedPlants) Phylogenetic Tree(s): OG_06_0002285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003897_P001
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.04 Archaeplastida
LOC_Os04g16738.1 No alias component psRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
LOC_Os04g16764.1 No alias component psRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
LOC_Os10g38214.1 No alias component psRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
Solyc00g500212.1.1 No alias component psRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
Zm00001e013560_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.04 Archaeplastida
Zm00001e042236_P001 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004779 sulfate adenylyltransferase activity IEP Neighborhood
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0010011 auxin binding IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 3 88
IPR002942 S4_RNA-bd 89 136
No external refs found!