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  5. Zm00001e004092_P002

Zm00001e004092_P002


Description : component RPS8 of SSU proteome


Gene families : OG0001661 (Archaeplastida) Phylogenetic Tree(s): OG0001661_tree ,
OG_05_0001408 (LandPlants) Phylogenetic Tree(s): OG_05_0001408_tree ,
OG_06_0002231 (SeedPlants) Phylogenetic Tree(s): OG_06_0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004092_P002
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
AT5G20290 No alias Ribosomal protein S8e family protein 0.18 Archaeplastida
AT5G59240 No alias Ribosomal protein S8e family protein 0.04 Archaeplastida
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
GSVIVT01006249001 No alias 40S ribosomal protein S8 OS=Zea mays 0.03 Archaeplastida
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Gb_28325 No alias component RPS8 of SSU proteome 0.13 Archaeplastida
LOC_Os02g28810.1 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.16 Archaeplastida
LOC_Os04g28180.1 No alias component RPS8 of SSU proteome 0.14 Archaeplastida
MA_14571g0010 No alias component RPS8 of SSU proteome 0.16 Archaeplastida
MA_4907g0010 No alias 40S ribosomal protein S8 OS=Prunus armeniaca... 0.07 Archaeplastida
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.11 Archaeplastida
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.22 Archaeplastida
Pp3c12_18260V3.1 No alias Ribosomal protein S8e family protein 0.08 Archaeplastida
Pp3c13_20020V3.1 No alias Ribosomal protein S8e family protein 0.21 Archaeplastida
Pp3c19_6490V3.1 No alias Ribosomal protein S8e family protein 0.17 Archaeplastida
Pp3c22_1860V3.1 No alias Ribosomal protein S8e family protein 0.21 Archaeplastida
Pp3c4_11370V3.1 No alias Ribosomal protein S8e family protein 0.13 Archaeplastida
Solyc06g007570.3.1 No alias component RPS8 of SSU proteome 0.15 Archaeplastida
Solyc06g083180.4.1 No alias component RPS8 of SSU proteome 0.19 Archaeplastida
Solyc07g065170.3.1 No alias component RPS8 of SSU proteome 0.1 Archaeplastida
Solyc09g057650.3.1 No alias component RPS8 of SSU proteome 0.09 Archaeplastida
Solyc10g006070.3.1 No alias component RPS8 of SSU proteome 0.14 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 199
No external refs found!