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  5. Zm00001e004284_P002

Zm00001e004284_P002


Description : CRS1 plastidial RNA splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0011370 (LandPlants) Phylogenetic Tree(s): OG_05_0011370_tree ,
OG_06_0011406 (SeedPlants) Phylogenetic Tree(s): OG_06_0011406_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004284_P002
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.07 Archaeplastida
LOC_Os11g37990.1 No alias CFM3-type plastidial RNA splicing factor 0.1 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.02 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.03 Archaeplastida
Solyc02g087250.4.1 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 564 651
IPR001890 RNA-binding_CRM 170 254
IPR001890 RNA-binding_CRM 353 436
No external refs found!