AT3G10910

Description : RING/U-box superfamily protein

Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000216 (SeedPlants) Phylogenetic Tree(s): OG_06_0000216_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G10910
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00229930	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AMTR_s00030p00032810	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
AMTR_s00077p00070720	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00152p00054630	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
AT1G04360	No alias	RING/U-box superfamily protein	0.08	Archaeplastida
AT1G53010	No alias	RING/U-box superfamily protein	0.06	Archaeplastida
AT2G28920	No alias	RING/U-box superfamily protein	0.07	Archaeplastida
AT4G09100	No alias	RING/U-box superfamily protein	0.06	Archaeplastida
AT5G41400	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
AT5G58580	ATL63, TL63	TOXICOS EN LEVADURA 63	0.04	Archaeplastida
GSVIVT01008754001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01009096001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01023776001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01027769001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_03946	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_05004	No alias	Probable E3 ubiquitin-protein ligase RHA1A...	0.03	Archaeplastida
Gb_05005	No alias	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis...	0.03	Archaeplastida
Gb_35043	No alias	NEP1-interacting protein 1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Gb_36232	No alias	IDF1 iron uptake IRT1-ubiquitin ligase	0.03	Archaeplastida
LOC_Os01g11460.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os01g16120.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os01g61470.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g15110.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g33720.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os02g35440.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g46600.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os03g05560.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os03g28080.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os03g44636.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
LOC_Os04g16970.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os04g49000.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os04g49160.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os05g15170.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os05g29710.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os05g36310.1	No alias	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os06g07100.2	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os06g16060.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os06g34560.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os09g37050.1	No alias	NEP1-interacting protein 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os10g42390.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
LOC_Os11g02424.1	No alias	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os12g02210.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os12g24530.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_10021g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_10426834g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_10434759g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_133839g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_13397g0010	No alias	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_167410g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_201391g0010	No alias	Probable E3 ubiquitin-protein ligase RHA1A...	0.03	Archaeplastida
MA_226198g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_25345g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_31462g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_31736g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_402876g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_61738g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_6931619g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_7120568g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_816764g0010	No alias	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_8556123g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Mp4g15970.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Mp6g19130.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Pp3c14_22300V3.1	No alias	No annotation	0.03	Archaeplastida
Pp3c20_12240V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c22_15440V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c23_10580V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c23_1651V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c26_11650V3.1	No alias	TOXICOS EN LEVADURA 2	0.04	Archaeplastida
Pp3c4_30240V3.1	No alias	TOXICOS EN LEVADURA 2	0.03	Archaeplastida
Pp3c5_4170V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Smo412606	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Smo448587	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Solyc02g068415.1.1	No alias	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc02g083660.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc03g005490.4.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Solyc03g114090.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc03g114190.1.1	No alias	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana...	0.07	Archaeplastida
Solyc03g123680.1.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Solyc04g074820.3.1	No alias	RING-H2-class E3 ligase	0.1	Archaeplastida
Solyc10g009487.1.1	No alias	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Solyc11g005300.2.1	No alias	RING-H2-class E3 ligase	0.11	Archaeplastida
Solyc11g005320.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc12g087860.3.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc12g094690.1.1	No alias	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Zm00001e000398_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e002272_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e007129_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e008560_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e011901_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e014286_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e015805_P001	No alias	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e023515_P001	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Zm00001e023585_P001	No alias	RING-H2-class E3 ligase	0.09	Archaeplastida
Zm00001e026906_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e035560_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e038107_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006868	glutamine transport	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Neighborhood
MF	GO:0008395	steroid hydroxylase activity	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009809	lignin biosynthetic process	IEP	Neighborhood
CC	GO:0010008	endosome membrane	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
BP	GO:0010268	brassinosteroid homeostasis	IEP	Neighborhood
BP	GO:0010585	glutamine secretion	IEP	Neighborhood
CC	GO:0012505	endomembrane system	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0032890	regulation of organic acid transport	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
BP	GO:0042814	monopolar cell growth	IEP	Neighborhood
BP	GO:0044070	regulation of anion transport	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
BP	GO:0046717	acid secretion	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051952	regulation of amine transport	IEP	Neighborhood
BP	GO:0051955	regulation of amino acid transport	IEP	Neighborhood
BP	GO:0055088	lipid homeostasis	IEP	Neighborhood
BP	GO:0080143	regulation of amino acid export	IEP	Neighborhood
BP	GO:1903789	regulation of amino acid transmembrane transport	IEP	Neighborhood
BP	GO:1903959	regulation of anion transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	113	156

External Links

No external refs found!

AT3G10910

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation