Zm00001e004608_P001

Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana (sp|f4ilr7|dexh1_arath : 1373.0)

Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0000862 (LandPlants) Phylogenetic Tree(s): OG_05_0000862_tree ,
OG_06_0000964 (SeedPlants) Phylogenetic Tree(s): OG_06_0000964_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e004608_P001
Cluster	HCCA: Cluster_216

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00115360	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.05	Archaeplastida
AMTR_s00028p00237040	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00032p00104970	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT1G06670	NIH	nuclear DEIH-boxhelicase	0.04	Archaeplastida
AT1G58060	No alias	RNA helicase family protein	0.06	Archaeplastida
AT2G01130	No alias	DEA(D/H)-box RNA helicase family protein	0.04	Archaeplastida
AT2G30800	HVT1, ATVT-1	helicase in vascular tissue and tapetum	0.03	Archaeplastida
AT5G04895	No alias	DEA(D/H)-box RNA helicase family protein	0.04	Archaeplastida
Cre06.g266416	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	Archaeplastida
GSVIVT01011809001	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.04	Archaeplastida
GSVIVT01020822001	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01023271001	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	Archaeplastida
Gb_05411	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.05	Archaeplastida
Gb_13707	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os01g02884.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os01g56190.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os03g53760.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.06	Archaeplastida
LOC_Os04g35260.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.05	Archaeplastida
LOC_Os10g33275.1	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida
MA_10425930g0020	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.02	Archaeplastida
MA_10429367g0010	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.02	Archaeplastida
MA_10432575g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.05	Archaeplastida
MA_10434659g0010	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	Archaeplastida
MA_10435499g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_109435g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_177779g0010	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.03	Archaeplastida
MA_97917g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.04	Archaeplastida
Mp1g27560.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.02	Archaeplastida
Mp3g02150.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	Archaeplastida
Mp5g09990.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.04	Archaeplastida
Pp3c11_11510V3.1	No alias	helicase in vascular tissue and tapetum	0.06	Archaeplastida
Pp3c11_11920V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c14_12310V3.1	No alias	RNA helicase family protein	0.05	Archaeplastida
Pp3c26_14400V3.1	No alias	RNA helicase family protein	0.06	Archaeplastida
Smo173775	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Smo177444	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	Archaeplastida
Smo50132	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc01g006710.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g006970.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.07	Archaeplastida
Solyc01g103690.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.09	Archaeplastida
Solyc07g044930.3.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Neighborhood
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004559	alpha-mannosidase activity	IEP	Neighborhood
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006013	mannose metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006474	N-terminal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006906	vesicle fusion	IEP	Neighborhood
CC	GO:0008023	transcription elongation factor complex	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0015923	mannosidase activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016050	vesicle organization	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
BP	GO:0017196	N-terminal peptidyl-methionine acetylation	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018206	peptidyl-methionine modification	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
CC	GO:0031248	protein acetyltransferase complex	IEP	Neighborhood
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Neighborhood
CC	GO:0031414	N-terminal protein acetyltransferase complex	IEP	Neighborhood
CC	GO:0031417	NatC complex	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0043631	RNA polyadenylation	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0048280	vesicle fusion with Golgi apparatus	IEP	Neighborhood
BP	GO:0048284	organelle fusion	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0060090	molecular adaptor activity	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
BP	GO:0061025	membrane fusion	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
MF	GO:0070566	adenylyltransferase activity	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090174	organelle membrane fusion	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
CC	GO:1902493	acetyltransferase complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	530	658
IPR011545	DEAD/DEAH_box_helicase_dom	279	426
IPR007502	Helicase-assoc_dom	722	803
IPR011709	DUF1605	881	961

External Links

No external refs found!

Zm00001e004608_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation