- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : pectate lyase
Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e004654_P002 | |
| Cluster | HCCA: Cluster_69 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00039p00189000 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.06 | Archaeplastida | |
| AMTR_s00120p00111300 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.09 | Archaeplastida | |
| AT1G04680 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT1G67750 | No alias | Pectate lyase family protein | 0.04 | Archaeplastida | |
| AT3G53190 | No alias | Pectin lyase-like superfamily protein | 0.06 | Archaeplastida | |
| AT4G24780 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT5G04310 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT5G63180 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| GSVIVT01008053001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| GSVIVT01011348001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| GSVIVT01033671001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | Archaeplastida | |
| LOC_Os04g05050.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| LOC_Os06g38510.2 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| LOC_Os10g31910.1 | No alias | pectate lyase | 0.18 | Archaeplastida | |
| MA_10430145g0030 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_1164682g0010 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_204440g0010 | No alias | Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... | 0.03 | Archaeplastida | |
| MA_394910g0010 | No alias | Probable pectate lyase 22 OS=Arabidopsis thaliana... | 0.02 | Archaeplastida | |
| MA_52869g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Mp8g00770.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Pp3c14_6710V3.1 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| Pp3c1_10180V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c1_10470V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c1_33130V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c21_16990V3.1 | No alias | Pectate lyase family protein | 0.04 | Archaeplastida | |
| Pp3c22_19760V3.1 | No alias | Pectate lyase family protein | 0.03 | Archaeplastida | |
| Pp3c22_19780V3.1 | No alias | Pectate lyase family protein | 0.03 | Archaeplastida | |
| Pp3c3_20320V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3s38_30V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Smo407495 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| Smo81909 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| Solyc02g067450.4.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Solyc02g080910.4.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Solyc03g058890.4.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Solyc03g071570.3.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Solyc05g055510.3.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Solyc09g008380.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc09g061890.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0004672 | protein kinase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
| BP | GO:0006468 | protein phosphorylation | IEP | Neighborhood |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0016301 | kinase activity | IEP | Neighborhood |
| BP | GO:0016310 | phosphorylation | IEP | Neighborhood |
| MF | GO:0016740 | transferase activity | IEP | Neighborhood |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| BP | GO:0030001 | metal ion transport | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0036211 | protein modification process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| MF | GO:0046983 | protein dimerization activity | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 327 | 496 |
| No external refs found! |