1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G12620

AT1G12620


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0005757 (Archaeplastida) Phylogenetic Tree(s): OG0005757_tree ,
OG_05_0003900 (LandPlants) Phylogenetic Tree(s): OG_05_0003900_tree ,
OG_06_0002486 (SeedPlants) Phylogenetic Tree(s): OG_06_0002486_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G12620
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT5G41170 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0010427 abscisic acid binding IEP Neighborhood
MF GO:0019840 isoprenoid binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0043178 alcohol binding IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0071470 cellular response to osmotic stress IEP Neighborhood
BP GO:0071472 cellular response to salt stress IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 59 117
IPR002885 Pentatricopeptide_repeat 242 274
IPR002885 Pentatricopeptide_repeat 137 169
IPR002885 Pentatricopeptide_repeat 564 593
IPR002885 Pentatricopeptide_repeat 175 224
IPR002885 Pentatricopeptide_repeat 281 325
IPR002885 Pentatricopeptide_repeat 350 399
IPR002885 Pentatricopeptide_repeat 491 539
IPR002885 Pentatricopeptide_repeat 421 469
No external refs found!