Zm00001e005165_P002


Description : component GRF of GRF-GIF transcriptional complex


Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0017597 (LandPlants) Phylogenetic Tree(s): OG_05_0017597_tree ,
OG_06_0017099 (SeedPlants) Phylogenetic Tree(s): OG_06_0017099_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005165_P002
Cluster HCCA: Cluster_277

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00189460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 Archaeplastida
AMTR_s00065p00092420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.06 Archaeplastida
AT2G22840 GRF1, AtGRF1 growth-regulating factor 1 0.03 Archaeplastida
AT2G36400 GRF3, AtGRF3 growth-regulating factor 3 0.03 Archaeplastida
GSVIVT01007165001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
GSVIVT01009299001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
GSVIVT01015095001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
GSVIVT01019913001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
GSVIVT01024326001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 Archaeplastida
GSVIVT01027535001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
Gb_20400 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
LOC_Os02g45570.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
LOC_Os03g47140.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
LOC_Os03g51970.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
LOC_Os12g29980.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
MA_33661g0010 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Mp8g16900.1 No alias component GRF of GRF-GIF transcriptional complex 0.05 Archaeplastida
Pp3c12_3720V3.1 No alias growth-regulating factor 2 0.04 Archaeplastida
Pp3c17_1780V3.1 No alias growth-regulating factor 2 0.03 Archaeplastida
Solyc01g091540.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Solyc03g082430.1.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Solyc04g077510.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc08g005430.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Solyc10g083510.2.1 No alias component GRF of GRF-GIF transcriptional complex 0.05 Archaeplastida
Solyc12g096070.2.1 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0032299 ribonuclease H2 complex IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014978 Gln-Leu-Gln_QLQ 102 135
IPR014977 WRC_dom 161 203
No external refs found!