Zm00001e005228_P001

Description : methyl-tetrahydrofolate-dependent methionine synthase

Gene families : OG0002593 (Archaeplastida) Phylogenetic Tree(s): OG0002593_tree ,
OG_05_0002149 (LandPlants) Phylogenetic Tree(s): OG_05_0002149_tree ,
OG_06_0002104 (SeedPlants) Phylogenetic Tree(s): OG_06_0002104_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e005228_P001
Cluster	HCCA: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00117110	evm_27.TU.AmTr_v1...	Amino acid metabolism.biosynthesis.aspartate...	0.05	Archaeplastida
AT3G03780	MS2, ATMS2	methionine synthase 2	0.06	Archaeplastida
AT5G17920	ATCIMS, ATMS1, ATMETS	Cobalamin-independent synthase family protein	0.1	Archaeplastida
Cre03.g180750	No alias	Amino acid metabolism.biosynthesis.aspartate...	0.07	Archaeplastida
GSVIVT01029971001	No alias	Amino acid metabolism.biosynthesis.aspartate...	0.11	Archaeplastida
Gb_23743	No alias	methyl-tetrahydrofolate-dependent methionine synthase	0.03	Archaeplastida
LOC_Os12g42876.1	No alias	methyl-tetrahydrofolate-dependent methionine synthase	0.15	Archaeplastida
LOC_Os12g42884.1	No alias	methyl-tetrahydrofolate-dependent methionine synthase	0.18	Archaeplastida
MA_10090g0010	No alias	methyl-tetrahydrofolate-dependent methionine synthase	0.06	Archaeplastida
MA_10427606g0010	No alias	methyl-tetrahydrofolate-dependent methionine synthase	0.05	Archaeplastida
MA_619693g0010	No alias	5-methyltetrahydropteroyltriglutamate--homocysteine...	0.02	Archaeplastida
Mp1g04570.1	No alias	methyl-tetrahydrofolate-dependent methionine synthase	0.04	Archaeplastida
Smo171028	No alias	Amino acid metabolism.biosynthesis.aspartate...	0.13	Archaeplastida
Solyc10g081510.2.1	No alias	methyl-tetrahydrofolate-dependent methionine synthase	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006555	methionine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008172	S-methyltransferase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0008652	cellular amino acid biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009086	methionine biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0004489	methylenetetrahydrofolate reductase (NAD(P)H) activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Neighborhood
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030244	cellulose biosynthetic process	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002629	Met_Synth_C/arc	460	783
IPR013215	Cbl-indep_Met_Synth_N	31	344

External Links

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Zm00001e005228_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation