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  5. Zm00001e005644_P001

Zm00001e005644_P001


Description : Protein SPIRRIG OS=Arabidopsis thaliana (sp|f4hzb2|bcha1_arath : 4464.0)


Gene families : OG0003010 (Archaeplastida) Phylogenetic Tree(s): OG0003010_tree ,
OG_05_0002479 (LandPlants) Phylogenetic Tree(s): OG_05_0002479_tree ,
OG_06_0005169 (SeedPlants) Phylogenetic Tree(s): OG_06_0005169_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005644_P001
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT1G03060 SPI Beige/BEACH domain ;WD domain, G-beta repeat protein 0.09 Archaeplastida
Cpa|evm.model.tig00021108.14 No alias Protein SPIRRIG OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01003123001 No alias BEACH domain-containing protein A2 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_31352 No alias Protein SPIRRIG OS=Arabidopsis thaliana... 0.12 Archaeplastida
Gb_31353 No alias Protein SPIRRIG OS=Arabidopsis thaliana... 0.09 Archaeplastida
LOC_Os03g53280.1 No alias Protein SPIRRIG OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_19995g0010 No alias Protein SPIRRIG OS=Arabidopsis thaliana... 0.07 Archaeplastida
Mp2g15880.1 No alias Protein SPIRRIG OS=Arabidopsis thaliana... 0.15 Archaeplastida
Pp3c6_26100V3.1 No alias Beige/BEACH domain ;WD domain, G-beta repeat protein 0.02 Archaeplastida
Solyc09g065700.3.1 No alias Protein SPIRRIG OS=Arabidopsis thaliana... 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 3331 3360
IPR001680 WD40_repeat 3377 3409
IPR000409 BEACH_dom 2968 3247
IPR023362 PH-BEACH_dom 2874 2929
No external refs found!