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  5. Zm00001e005961_P001

Zm00001e005961_P001


Description : xylogen-type arabinogalactan protein


Gene families : OG0000162 (Archaeplastida) Phylogenetic Tree(s): OG0000162_tree ,
OG_05_0000065 (LandPlants) Phylogenetic Tree(s): OG_05_0000065_tree ,
OG_06_0020090 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005961_P001
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00240480 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.03 Archaeplastida
AMTR_s00002p00272110 evm_27.TU.AmTr_v1... No description available 0.09 Archaeplastida
AMTR_s00002p00272120 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.04 Archaeplastida
AMTR_s00008p00146780 evm_27.TU.AmTr_v1... Protein YLS3 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00048p00225010 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.03 Archaeplastida
AMTR_s00119p00120480 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.02 Archaeplastida
AT1G03103 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 Archaeplastida
AT1G05450 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.06 Archaeplastida
AT1G55260 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
AT1G73890 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.07 Archaeplastida
AT2G13820 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.05 Archaeplastida
AT2G44290 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 Archaeplastida
AT2G44300 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
AT2G48130 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.05 Archaeplastida
AT2G48140 EDA4 Bifunctional inhibitor/lipid-transfer protein/seed... 0.1 Archaeplastida
AT3G22600 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.05 Archaeplastida
AT3G22620 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.09 Archaeplastida
AT3G43720 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
AT3G58550 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.16 Archaeplastida
AT4G14815 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
GSVIVT01001178001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.14 Archaeplastida
GSVIVT01001181001 No alias No description available 0.14 Archaeplastida
GSVIVT01001350001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.04 Archaeplastida
GSVIVT01008272001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.05 Archaeplastida
GSVIVT01018008001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.12 Archaeplastida
GSVIVT01018010001 No alias No description available 0.14 Archaeplastida
GSVIVT01029796001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.04 Archaeplastida
Gb_01917 No alias classical arabinogalactan protein 0.07 Archaeplastida
Gb_02441 No alias xylogen-type arabinogalactan protein 0.07 Archaeplastida
Gb_02443 No alias xylogen-type arabinogalactan protein 0.09 Archaeplastida
Gb_02457 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_02458 No alias xylogen-type arabinogalactan protein 0.09 Archaeplastida
Gb_06123 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_06428 No alias xylogen-type arabinogalactan protein 0.09 Archaeplastida
Gb_08579 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
Gb_11754 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Gb_24349 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
LOC_Os01g59870.1 No alias xylogen-type arabinogalactan protein 0.05 Archaeplastida
LOC_Os03g20760.1 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
LOC_Os03g57970.2 No alias xylogen-type arabinogalactan protein 0.14 Archaeplastida
LOC_Os03g57980.1 No alias no hits & (original description: none) 0.18 Archaeplastida
LOC_Os03g57990.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
LOC_Os03g58940.1 No alias xylogen-type arabinogalactan protein 0.02 Archaeplastida
LOC_Os07g07790.1 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
LOC_Os07g07860.1 No alias xylogen-type arabinogalactan protein 0.05 Archaeplastida
LOC_Os07g07920.1 No alias no hits & (original description: none) 0.15 Archaeplastida
LOC_Os07g07930.1 No alias xylogen-type arabinogalactan protein 0.05 Archaeplastida
LOC_Os07g30590.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_113140g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_115537g0010 No alias no hits & (original description: none) 0.12 Archaeplastida
MA_124502g0010 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
MA_139470g0010 No alias xylogen-type arabinogalactan protein 0.04 Archaeplastida
MA_19325g0010 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
MA_383975g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_494876g0010 No alias xylogen-type arabinogalactan protein 0.04 Archaeplastida
MA_50191g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_5581g0010 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
MA_64802g0020 No alias no hits & (original description: none) 0.12 Archaeplastida
MA_71069g0010 No alias xylogen-type arabinogalactan protein 0.04 Archaeplastida
MA_9903145g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g21600.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp8g18180.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Pp3c11_11470V3.1 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 Archaeplastida
Pp3c14_3790V3.1 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 Archaeplastida
Pp3c1_31020V3.1 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.06 Archaeplastida
Pp3c2_6280V3.1 No alias glycosylphosphatidylinositol-anchored lipid protein transfer 1 0.05 Archaeplastida
Pp3c6_760V3.1 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
Solyc01g005985.1.1 No alias xylogen-type arabinogalactan protein 0.04 Archaeplastida
Solyc01g073680.4.1 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
Solyc03g005200.3.1 No alias xylogen-type arabinogalactan protein 0.07 Archaeplastida
Solyc03g005210.4.1 No alias no hits & (original description: none) 0.15 Archaeplastida
Solyc06g054030.2.1 No alias xylogen-type arabinogalactan protein 0.14 Archaeplastida
Solyc06g054060.1.1 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida
Solyc09g065410.4.1 No alias xylogen-type arabinogalactan protein 0.07 Archaeplastida
Solyc09g065420.3.1 No alias xylogen-type arabinogalactan protein 0.12 Archaeplastida
Solyc09g065430.4.1 No alias xylogen-type arabinogalactan protein 0.12 Archaeplastida
Solyc09g065440.4.1 No alias no hits & (original description: none) 0.15 Archaeplastida
Solyc09g082280.3.1 No alias xylogen-type arabinogalactan protein 0.09 Archaeplastida
Solyc09g082290.3.1 No alias no hits & (original description: none) 0.16 Archaeplastida
Solyc09g082300.3.1 No alias no hits & (original description: none) 0.12 Archaeplastida
Solyc11g072030.3.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Zm00001e000506_P001 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Zm00001e028880_P001 No alias xylogen-type arabinogalactan protein 0.08 Archaeplastida
Zm00001e038813_P001 No alias xylogen-type arabinogalactan protein 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 17 115
No external refs found!