Zm00001e006246_P001

Description : component psRPL18 of large ribosomal subunit proteome

Gene families : OG0002601 (Archaeplastida) Phylogenetic Tree(s): OG0002601_tree ,
OG_05_0005445 (LandPlants) Phylogenetic Tree(s): OG_05_0005445_tree ,
OG_06_0007992 (SeedPlants) Phylogenetic Tree(s): OG_06_0007992_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e006246_P001
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00209880	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.1	Archaeplastida
AT1G48350	No alias	Ribosomal L18p/L5e family protein	0.21	Archaeplastida
Cre01.g052100	No alias	Protein biosynthesis.organelle translation...	0.14	Archaeplastida
GSVIVT01017720001	No alias	Protein biosynthesis.organelle translation...	0.16	Archaeplastida
GSVIVT01023016001	No alias	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea	0.01	Archaeplastida
Gb_12756	No alias	component psRPL18 of large ribosomal subunit proteome	0.17	Archaeplastida
LOC_Os03g61260.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.3	Archaeplastida
MA_7609850g0010	No alias	50S ribosomal protein L18, chloroplastic OS=Arabidopsis...	0.12	Archaeplastida
Mp6g08500.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.29	Archaeplastida
Pp3c11_5070V3.1	No alias	Ribosomal L18p/L5e family protein	0.19	Archaeplastida
Pp3c7_24650V3.1	No alias	Ribosomal L18p/L5e family protein	0.18	Archaeplastida
Smo143891	No alias	Protein biosynthesis.organelle translation...	0.07	Archaeplastida
Solyc05g007910.3.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.03	Archaeplastida
Solyc12g098890.2.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.25	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Neighborhood
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0006801	superoxide metabolic process	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0010207	photosystem II assembly	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
MF	GO:0051920	peroxiredoxin activity	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005484	Ribosomal_L18	49	165

External Links

No external refs found!

Zm00001e006246_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation