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  5. Zm00001e006249_P001

Zm00001e006249_P001


Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 452.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 64.5)


Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0001972 (SeedPlants) Phylogenetic Tree(s): OG_06_0001972_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006249_P001
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00141260 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AT1G19170 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G23900 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G06770 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G16850 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G42950 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G41870 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01015044001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01019405001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01019516001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 Archaeplastida
GSVIVT01028057001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01028246001 No alias Probable polygalacturonase OS=Vitis vinifera 0.09 Archaeplastida
GSVIVT01035089001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
Gb_06212 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
Gb_23151 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Gb_23153 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Gb_39001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.08 Archaeplastida
LOC_Os02g15690.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
LOC_Os02g54030.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
LOC_Os03g61800.2 No alias Probable polygalacturonase OS=Vitis vinifera... 0.07 Archaeplastida
LOC_Os05g50960.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.07 Archaeplastida
LOC_Os11g43750.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
LOC_Os12g36810.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
MA_10430135g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
MA_104339g0010 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
MA_88519g0010 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
Pp3c24_2470V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c6_7160V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Solyc03g117750.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
Solyc05g049980.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
Solyc06g009790.4.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 Archaeplastida
Zm00001e021051_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003872 6-phosphofructokinase activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 177 453
No external refs found!