AT3G12770 (MEF22)

Aliases : MEF22

Description : mitochondrial editing factor 22

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G12770
Cluster	HCCA: Cluster_257

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00210570	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
AMTR_s00061p00127300	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
AMTR_s00068p00072270	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT1G69350	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT3G13770	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT3G49142	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
GSVIVT01009407001	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
GSVIVT01020091001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
GSVIVT01027077001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01035491001	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
Gb_01226	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_03474	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_03691	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.04	Archaeplastida
Gb_03693	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_04844	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_05259	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.05	Archaeplastida
Gb_06568	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.04	Archaeplastida
Gb_08036	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_08569	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_08619	No alias	RNA editing factor (MEF19)	0.07	Archaeplastida
Gb_08862	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
Gb_09382	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_10726	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_11222	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_11581	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_11667	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_12240	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_14459	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Gb_15129	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.05	Archaeplastida
Gb_16070	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_17095	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_17294	No alias	RNA editing factor (MEF3)	0.04	Archaeplastida
Gb_17295	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Gb_18914	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Gb_18979	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_19828	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_20503	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_21237	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_23267	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_24674	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_25283	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_25869	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.04	Archaeplastida
Gb_26260	No alias	RNA editing factor (MEF7)	0.03	Archaeplastida
Gb_27797	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_28030	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
Gb_30146	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_30993	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_31546	No alias	RNA editing factor (MEF3)	0.04	Archaeplastida
Gb_31699	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.05	Archaeplastida
Gb_32447	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
Gb_32452	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
Gb_33328	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_33718	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_36636	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
Gb_38441	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Gb_38938	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_39298	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os01g55960.1	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.03	Archaeplastida
LOC_Os03g63260.3	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os09g24680.1	No alias	Pentatricopeptide repeat-containing protein At1g74600,...	0.04	Archaeplastida
LOC_Os10g34720.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_10214098g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_10426261g0020	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
MA_10432670g0020	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_104937g0010	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
MA_110g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_112594g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_115669g0020	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_131g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_138190g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_14938g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_1673g0010	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.03	Archaeplastida
MA_174226g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_187514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_19715g0020	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_19816g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_215359g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_24849g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_25515g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_25584g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_291996g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_2991g0010	No alias	RNA editing factor (MEF12)	0.03	Archaeplastida
MA_305950g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_3449g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_3471g0010	No alias	RNA editing factor (MEF19)	0.03	Archaeplastida
MA_412g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_445076g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_472579g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_502206g0010	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.04	Archaeplastida
MA_519985g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_52613g0020	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_5481g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_57048g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
MA_60579g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
MA_615077g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_63139g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_656915g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_66417g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_683665g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_73895g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
MA_742g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
MA_77437g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_77675g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_794605g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_805687g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
MA_81105g0010	No alias	RNA editing factor (OTP82)	0.04	Archaeplastida
MA_8319g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.04	Archaeplastida
MA_84538g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_86739g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_87646g0010	No alias	RNA editing factor (MEF13)	0.03	Archaeplastida
MA_8868720g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_89214g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_9258g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
MA_9354530g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_9384g0020	No alias	Pentatricopeptide repeat-containing protein At3g49170,...	0.03	Archaeplastida
MA_944980g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
MA_958908g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Pp3c2_12230V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
Smo34426	No alias	Pentatricopeptide repeat-containing protein At4g14820...	0.03	Archaeplastida
Smo79457	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Solyc01g081020.1.1	No alias	RNA editing factor (OTP80)	0.04	Archaeplastida
Solyc01g099000.1.1	No alias	Pentatricopeptide repeat-containing protein At3g05340...	0.03	Archaeplastida
Solyc02g088470.1.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.04	Archaeplastida
Solyc03g115790.1.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.03	Archaeplastida
Zm00001e001038_P001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.04	Archaeplastida
Zm00001e003284_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
Zm00001e005246_P001	No alias	Pentatricopeptide repeat-containing protein At2g41080...	0.03	Archaeplastida
Zm00001e009339_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e013713_P001	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.05	Archaeplastida
Zm00001e015727_P001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.05	Archaeplastida
Zm00001e020567_P001	No alias	RNA editing factor (MEF7)	0.07	Archaeplastida
Zm00001e030887_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e041694_P001	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IMP	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004815	aspartate-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005829	cytosol	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Neighborhood
CC	GO:0010445	nuclear dicing body	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
CC	GO:0016604	nuclear body	IEP	Neighborhood
CC	GO:0016607	nuclear speck	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
BP	GO:0031053	primary miRNA processing	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	Neighborhood
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood
BP	GO:2000011	regulation of adaxial/abaxial pattern formation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	561	684
IPR002885	Pentatricopeptide_repeat	186	232
IPR002885	Pentatricopeptide_repeat	82	129
IPR002885	Pentatricopeptide_repeat	286	334
IPR002885	Pentatricopeptide_repeat	388	434
IPR002885	Pentatricopeptide_repeat	362	385
IPR002885	Pentatricopeptide_repeat	462	485

External Links

No external refs found!

AT3G12770 (MEF22)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation