Zm00001e006640_P002

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e006640_P002
Cluster	HCCA: Cluster_277

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.02	Archaeplastida
AT3G61830	ARF18	auxin response factor 18	0.02	Archaeplastida
AT4G23980	ARF9	auxin response factor 9	0.03	Archaeplastida
AT4G30080	ARF16	auxin response factor 16	0.04	Archaeplastida
GSVIVT01008639001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.06	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01021553001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01023149001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01035204001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_12414	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os01g48060.1	No alias	transcription factor (ARF)	0.1	Archaeplastida
LOC_Os02g35140.1	No alias	transcription factor (ARF)	0.07	Archaeplastida
LOC_Os04g36054.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.07	Archaeplastida
LOC_Os06g46410.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os12g29520.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_10432580g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_85955g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_85955g0020	No alias	transcription factor (ARF)	0.02	Archaeplastida
Mp1g12750.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c4_12970V3.1	No alias	auxin response factor 16	0.06	Archaeplastida
Pp3c4_13010V3.1	No alias	auxin response factor 16	0.05	Archaeplastida
Solyc01g096070.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc03g031970.4.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc04g081240.2.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc09g007810.4.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e003591_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e008040_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e018761_P001	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e021527_P006	No alias	transcription factor (ARF)	0.07	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	844	920
IPR003340	B3_DNA-bd	144	245
IPR010525	Auxin_resp	270	352

External Links

No external refs found!

Zm00001e006640_P002

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation