Zm00001e006878_P004


Description : no hits & (original description: none)


Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0030317 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0028876 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006878_P004
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT1G49600 RBP47A, ATRBP47A RNA-binding protein 47A 0.04 Archaeplastida
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.07 Archaeplastida
Cpa|evm.model.tig00021489.29 No alias Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre16.g652900 No alias Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01037634001 No alias Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.04 Archaeplastida
GSVIVT01037635001 No alias Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.06 Archaeplastida
LOC_Os03g07800.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
LOC_Os04g37690.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.07 Archaeplastida
LOC_Os04g53440.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
LOC_Os07g33330.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
MA_10433660g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Pp3c12_10910V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Pp3c12_10960V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Pp3c4_13300V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 Archaeplastida
Smo80061 No alias Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.06 Archaeplastida
Solyc02g080420.4.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Solyc03g031720.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.06 Archaeplastida
Solyc07g064510.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.05 Archaeplastida
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Zm00001e009967_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003937 IMP cyclohydrolase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!