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  5. Zm00001e006958_P005

Zm00001e006958_P005


Description : polygalacturonase (QRT3)


Gene families : OG0003590 (Archaeplastida) Phylogenetic Tree(s): OG0003590_tree ,
OG_05_0002501 (LandPlants) Phylogenetic Tree(s): OG_05_0002501_tree ,
OG_06_0001950 (SeedPlants) Phylogenetic Tree(s): OG_06_0001950_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006958_P005
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00131940 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.02 Archaeplastida
AMTR_s00319p00013650 evm_27.TU.AmTr_v1... Polygalacturonase QRT3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s03255p00000400 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.04 Archaeplastida
AMTR_s05553p00004300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.04 Archaeplastida
GSVIVT01012139001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
Gb_20660 No alias polygalacturonase (QRT3) 0.03 Archaeplastida
LOC_Os04g52320.1 No alias polygalacturonase (QRT3) 0.03 Archaeplastida
MA_10425986g0010 No alias polygalacturonase (QRT3) 0.03 Archaeplastida
MA_10425986g0020 No alias polygalacturonase (QRT3) 0.04 Archaeplastida
MA_6579986g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8818361g0010 No alias polygalacturonase (QRT3) 0.03 Archaeplastida
MA_917578g0010 No alias polygalacturonase (QRT3) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR024535 Pectate_lyase_SF_prot 98 158
No external refs found!