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  5. Zm00001e007233_P001

Zm00001e007233_P001


Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e007233_P001
Cluster HCCA: Cluster_277

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.01 Archaeplastida
AT2G27880 AGO5 Argonaute family protein 0.01 Archaeplastida
AT5G21150 AGO9 Argonaute family protein 0.01 Archaeplastida
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Archaeplastida
GSVIVT01025868001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01029383001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
LOC_Os02g58490.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 Archaeplastida
LOC_Os06g51310.2 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 Archaeplastida
MA_161177g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.11 Archaeplastida
Solyc01g010970.3.1 No alias Protein argonaute 7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g072300.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 Archaeplastida
Solyc07g049500.3.1 No alias siRNA-integrating factor (AGO) 0.01 Archaeplastida
Zm00001e004997_P001 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e011432_P001 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Zm00001e030606_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
Zm00001e034855_P001 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014811 ArgoL1 382 431
IPR003100 PAZ_dom 438 563
IPR024357 Argonaut_Gly-rich 112 215
IPR032474 Argonaute_N 234 372
IPR003165 Piwi 725 1044
IPR032473 Argonaute_Mid_dom 631 705
IPR032472 ArgoL2 574 620
No external refs found!