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  5. Zm00001e007886_P001

Zm00001e007886_P001


Description : Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana (sp|o04491|ppr26_arath : 414.0)


Gene families : OG0010041 (Archaeplastida) Phylogenetic Tree(s): OG0010041_tree ,
OG_05_0009710 (LandPlants) Phylogenetic Tree(s): OG_05_0009710_tree ,
OG_06_0008177 (SeedPlants) Phylogenetic Tree(s): OG_06_0008177_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e007886_P001
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
Gb_03162 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os04g38930.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 253 301
IPR002885 Pentatricopeptide_repeat 117 161
IPR002885 Pentatricopeptide_repeat 182 231
IPR002885 Pentatricopeptide_repeat 392 441
IPR002885 Pentatricopeptide_repeat 323 371
No external refs found!