AT3G13840

Description : GRAS family transcription factor

Gene families : OG0009166 (Archaeplastida) Phylogenetic Tree(s): OG0009166_tree ,
OG_05_0009071 (LandPlants) Phylogenetic Tree(s): OG_05_0009071_tree ,
OG_06_0010169 (SeedPlants) Phylogenetic Tree(s): OG_06_0010169_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13840
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc12g049320.3.1	No alias	Nodulation-signaling pathway 1 protein OS=Medicago...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004805	trehalose-phosphatase activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005202	TF_GRAS	146	510

External Links

No external refs found!

AT3G13840

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation