AT3G13960 (GRF5, AtGRF5)


Aliases : GRF5, AtGRF5

Description : growth-regulating factor 5


Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0000223 (LandPlants) Phylogenetic Tree(s): OG_05_0000223_tree ,
OG_06_0000402 (SeedPlants) Phylogenetic Tree(s): OG_06_0000402_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13960
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00228870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
AMTR_s00040p00189460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.06 Archaeplastida
AMTR_s00065p00092420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.06 Archaeplastida
AMTR_s00069p00196720 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 Archaeplastida
AT2G06200 GRF6, AtGRF6 growth-regulating factor 6 0.03 Archaeplastida
AT2G36400 GRF3, AtGRF3 growth-regulating factor 3 0.06 Archaeplastida
AT3G52910 GRF4, AtGRF4 growth-regulating factor 4 0.04 Archaeplastida
GSVIVT01007165001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
GSVIVT01009299001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 Archaeplastida
GSVIVT01015095001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.09 Archaeplastida
GSVIVT01016762001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.08 Archaeplastida
GSVIVT01019667001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
GSVIVT01019913001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
GSVIVT01024326001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.06 Archaeplastida
GSVIVT01027535001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 Archaeplastida
GSVIVT01033800001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.07 Archaeplastida
GSVIVT01038629001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
Gb_05477 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Gb_20400 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Gb_20443 No alias component GRF of GRF-GIF transcriptional complex 0.05 Archaeplastida
Gb_26136 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
LOC_Os02g45570.1 No alias component GRF of GRF-GIF transcriptional complex 0.08 Archaeplastida
LOC_Os02g47280.1 No alias component GRF of GRF-GIF transcriptional complex 0.1 Archaeplastida
LOC_Os02g53690.1 No alias component GRF of GRF-GIF transcriptional complex 0.05 Archaeplastida
LOC_Os03g47140.1 No alias component GRF of GRF-GIF transcriptional complex 0.06 Archaeplastida
LOC_Os03g51970.1 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
LOC_Os04g48510.1 No alias component GRF of GRF-GIF transcriptional complex 0.12 Archaeplastida
LOC_Os06g02560.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
LOC_Os11g35030.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
LOC_Os12g29980.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
MA_111469g0010 No alias component GRF of GRF-GIF transcriptional complex 0.09 Archaeplastida
MA_137877g0010 No alias component GRF of GRF-GIF transcriptional complex 0.06 Archaeplastida
MA_18836g0010 No alias component GRF of GRF-GIF transcriptional complex 0.06 Archaeplastida
MA_33661g0010 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Mp8g16900.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Pp3c12_3720V3.1 No alias growth-regulating factor 2 0.05 Archaeplastida
Pp3c17_1780V3.1 No alias growth-regulating factor 2 0.04 Archaeplastida
Smo420739 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 Archaeplastida
Solyc01g091540.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.11 Archaeplastida
Solyc03g082430.1.1 No alias component GRF of GRF-GIF transcriptional complex 0.09 Archaeplastida
Solyc04g077510.4.1 No alias no hits & (original description: none) 0.12 Archaeplastida
Solyc07g041640.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Solyc08g005430.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.09 Archaeplastida
Solyc10g083510.2.1 No alias component GRF of GRF-GIF transcriptional complex 0.1 Archaeplastida
Solyc12g096070.2.1 No alias component GRF of GRF-GIF transcriptional complex 0.08 Archaeplastida
Zm00001e011207_P003 No alias component GRF of GRF-GIF transcriptional complex 0.07 Archaeplastida
Zm00001e012104_P002 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Zm00001e015436_P001 No alias component GRF of GRF-GIF transcriptional complex 0.08 Archaeplastida
Zm00001e015561_P002 No alias component GRF of GRF-GIF transcriptional complex 0.08 Archaeplastida
Zm00001e016029_P002 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Zm00001e023769_P003 No alias component GRF of GRF-GIF transcriptional complex 0.07 Archaeplastida
Zm00001e029851_P005 No alias component GRF of GRF-GIF transcriptional complex 0.12 Archaeplastida
Zm00001e030774_P001 No alias component GRF of GRF-GIF transcriptional complex 0.07 Archaeplastida
Zm00001e036224_P001 No alias component GRF of GRF-GIF transcriptional complex 0.07 Archaeplastida
Zm00001e036657_P001 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Zm00001e041573_P002 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009737 response to abscisic acid RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0016570 histone modification RCA Interproscan
BP GO:0048366 leaf development IMP Interproscan
BP GO:0048366 leaf development TAS Interproscan
BP GO:0048449 floral organ formation RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0001708 cell fate specification IEP Neighborhood
BP GO:0001763 morphogenesis of a branching structure IEP Neighborhood
BP GO:0002237 response to molecule of bacterial origin IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
BP GO:0003156 regulation of animal organ formation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003756 protein disulfide isomerase activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007166 cell surface receptor signaling pathway IEP Neighborhood
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP Neighborhood
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008195 phosphatidate phosphatase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009641 shade avoidance IEP Neighborhood
BP GO:0009798 axis specification IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009887 animal organ morphogenesis IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0009943 adaxial/abaxial axis specification IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0009947 centrolateral axis specification IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
BP GO:0009962 regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010016 shoot system morphogenesis IEP Neighborhood
BP GO:0010051 xylem and phloem pattern formation IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010093 specification of floral organ identity IEP Neighborhood
BP GO:0010103 stomatal complex morphogenesis IEP Neighborhood
BP GO:0010148 transpiration IEP Neighborhood
BP GO:0010158 abaxial cell fate specification IEP Neighborhood
BP GO:0010159 specification of animal organ position IEP Neighborhood
BP GO:0010160 formation of animal organ boundary IEP Neighborhood
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP Neighborhood
BP GO:0010223 secondary shoot formation IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010338 leaf formation IEP Neighborhood
BP GO:0010346 shoot axis formation IEP Neighborhood
BP GO:0010440 stomatal lineage progression IEP Neighborhood
BP GO:0010450 inflorescence meristem growth IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010865 stipule development IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0019199 transmembrane receptor protein kinase activity IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0030155 regulation of cell adhesion IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0030332 cyclin binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031537 regulation of anthocyanin metabolic process IEP Neighborhood
BP GO:0031540 regulation of anthocyanin biosynthetic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0035266 meristem growth IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0040009 regulation of growth rate IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045165 cell fate commitment IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046620 regulation of organ growth IEP Neighborhood
BP GO:0046622 positive regulation of organ growth IEP Neighborhood
MF GO:0047434 indolepyruvate decarboxylase activity IEP Neighborhood
BP GO:0048281 inflorescence morphogenesis IEP Neighborhood
BP GO:0048437 floral organ development IEP Neighborhood
BP GO:0048439 flower morphogenesis IEP Neighborhood
BP GO:0048443 stamen development IEP Neighborhood
BP GO:0048444 floral organ morphogenesis IEP Neighborhood
BP GO:0048446 petal morphogenesis IEP Neighborhood
BP GO:0048448 stamen morphogenesis IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048455 stamen formation IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
BP GO:0048504 regulation of timing of animal organ formation IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048608 reproductive structure development IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048639 positive regulation of developmental growth IEP Neighborhood
BP GO:0048653 anther development IEP Neighborhood
BP GO:0048859 formation of anatomical boundary IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090567 reproductive shoot system development IEP Neighborhood
BP GO:0090626 plant epidermis morphogenesis IEP Neighborhood
BP GO:0090691 formation of plant organ boundary IEP Neighborhood
BP GO:0090697 post-embryonic plant organ morphogenesis IEP Neighborhood
BP GO:0090698 post-embryonic plant morphogenesis IEP Neighborhood
BP GO:0090701 specification of plant organ identity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
BP GO:2000027 regulation of animal organ morphogenesis IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014977 WRC_dom 82 122
IPR014978 Gln-Leu-Gln_QLQ 16 50
No external refs found!