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  5. Zm00001e008200_P001

Zm00001e008200_P001


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 947.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e008200_P001
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.02 Archaeplastida
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00065p00033910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49740... 0.02 Archaeplastida
AMTR_s00078p00125150 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.02 Archaeplastida
AMTR_s00081p00019740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27110... 0.05 Archaeplastida
AMTR_s00081p00056740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
AMTR_s03531p00004900 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01019231001 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
GSVIVT01024233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.04 Archaeplastida
GSVIVT01026141001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
GSVIVT01033004001 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.06 Archaeplastida
GSVIVT01035920001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.11 Archaeplastida
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
Gb_16062 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_23018 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_27891 No alias RNA editing factor (OTP86) 0.01 Archaeplastida
LOC_Os01g10090.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os02g01610.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os04g43430.2 No alias RNA editing factor (MEF12) 0.03 Archaeplastida
LOC_Os05g49740.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.05 Archaeplastida
LOC_Os06g30940.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_114565g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7691g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Pp3c3_24770V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo102603 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.01 Archaeplastida
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
Solyc02g065410.3.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.07 Archaeplastida
Solyc03g063690.1.1 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Solyc03g120460.4.1 No alias No annotation 0.02 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.02 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.02 Archaeplastida
Solyc11g040060.3.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 758 881
IPR002885 Pentatricopeptide_repeat 82 107
IPR002885 Pentatricopeptide_repeat 559 582
IPR002885 Pentatricopeptide_repeat 358 383
IPR002885 Pentatricopeptide_repeat 110 136
IPR002885 Pentatricopeptide_repeat 456 482
IPR002885 Pentatricopeptide_repeat 385 415
IPR002885 Pentatricopeptide_repeat 211 225
IPR002885 Pentatricopeptide_repeat 257 276
IPR002885 Pentatricopeptide_repeat 282 328
IPR002885 Pentatricopeptide_repeat 585 631
IPR002885 Pentatricopeptide_repeat 483 532
No external refs found!