AT3G14330

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0020728 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0019981 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G14330

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00248070	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g33680...	0.05	Archaeplastida
AT1G22830	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.01	Archaeplastida
AT5G04780	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.01	Archaeplastida
GSVIVT01033654001	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
LOC_Os07g31000.1	No alias	no hits & (original description: none)	0.01	Archaeplastida
LOC_Os11g29360.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.03	Archaeplastida
Smo151406	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
Smo72231	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.04	Archaeplastida
Solyc07g042130.4.1	No alias	no hits & (original description: none)	0.1	Archaeplastida
Zm00001e019452_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e039305_P001	No alias	RNA editing factor (MEF13)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	401	449
IPR002885	Pentatricopeptide_repeat	300	348
IPR002885	Pentatricopeptide_repeat	204	228
IPR002885	Pentatricopeptide_repeat	477	500
IPR032867	DYW_dom	576	699

External Links

No external refs found!

AT3G14330

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation