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  5. Zm00001e009450_P001

Zm00001e009450_P001


Description : Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana (sp|q8lb54|prp38_arath : 318.0)


Gene families : OG0004992 (Archaeplastida) Phylogenetic Tree(s): OG0004992_tree ,
OG_05_0005450 (LandPlants) Phylogenetic Tree(s): OG_05_0005450_tree ,
OG_06_0005471 (SeedPlants) Phylogenetic Tree(s): OG_06_0005471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e009450_P001
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AT2G40650 No alias PRP38 family protein 0.07 Archaeplastida
Cre12.g503400 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os09g01630.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.12 Archaeplastida
Mp4g12850.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc01g100060.4.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR024767 PRP38_C 179 276
IPR005037 PRP38 10 173
No external refs found!