1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e010238_P001

Zm00001e010238_P001


Description : basal transcription factor (TFIIb)


Gene families : OG0001457 (Archaeplastida) Phylogenetic Tree(s): OG0001457_tree ,
OG_05_0004318 (LandPlants) Phylogenetic Tree(s): OG_05_0004318_tree ,
OG_06_0005151 (SeedPlants) Phylogenetic Tree(s): OG_06_0005151_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010238_P001
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT3G10330 No alias Cyclin-like family protein 0.03 Archaeplastida
Gb_26252 No alias basal transcription factor (TFIIb) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR013150 TFIIB_cyclin 214 281
IPR013150 TFIIB_cyclin 112 176
IPR013137 Znf_TFIIB 6 47
No external refs found!