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  5. Zm00001e010307_P004

Zm00001e010307_P004


Description : component TAF15 of TFIId basal transcription regulation complex


Gene families : OG0006677 (Archaeplastida) Phylogenetic Tree(s): OG0006677_tree ,
OG_05_0007121 (LandPlants) Phylogenetic Tree(s): OG_05_0007121_tree ,
OG_06_0007805 (SeedPlants) Phylogenetic Tree(s): OG_06_0007805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010307_P004
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00107550 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cre07.g328400 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
LOC_Os07g19560.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.03 Archaeplastida
LOC_Os09g12800.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.02 Archaeplastida
Mp8g16600.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida
Solyc11g040050.3.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 218 244
IPR001876 Znf_RanBP2 143 172
IPR000504 RRM_dom 14 91
No external refs found!