AT3G16010


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG0007620 (Archaeplastida) Phylogenetic Tree(s): OG0007620_tree ,
OG_05_0006283 (LandPlants) Phylogenetic Tree(s): OG_05_0006283_tree ,
OG_06_0005058 (SeedPlants) Phylogenetic Tree(s): OG_06_0005058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G16010
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Gb_20376 No alias group-II intron mitochondrial splicing factor (MISF68) 0.06 Archaeplastida
Smo81759 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 341 365
IPR002885 Pentatricopeptide_repeat 446 473
IPR002885 Pentatricopeptide_repeat 198 227
IPR002885 Pentatricopeptide_repeat 481 509
IPR002885 Pentatricopeptide_repeat 229 260
IPR002885 Pentatricopeptide_repeat 269 314
IPR002885 Pentatricopeptide_repeat 512 561
IPR002885 Pentatricopeptide_repeat 582 629
IPR002885 Pentatricopeptide_repeat 371 421
No external refs found!