Zm00001e010480_P001


Description : DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa subsp. japonica (sp|q0d622|rh32_orysj : 957.0)


Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0006899 (LandPlants) Phylogenetic Tree(s): OG_05_0006899_tree ,
OG_06_0007714 (SeedPlants) Phylogenetic Tree(s): OG_06_0007714_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010480_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 Archaeplastida
AMTR_s00007p00266810 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00062p00159540 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.08 Archaeplastida
AT2G40700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.09 Archaeplastida
AT3G18600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
AT5G05450 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
AT5G54910 No alias DEA(D/H)-box RNA helicase family protein 0.07 Archaeplastida
AT5G65900 No alias DEA(D/H)-box RNA helicase family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000441.11 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 Archaeplastida
Cpa|evm.model.tig00000615.43 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.04 Archaeplastida
Cpa|evm.model.tig00020684.38 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.03 Archaeplastida
Cre03.g156150 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.12 Archaeplastida
Cre03.g188550 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.1 Archaeplastida
Cre06.g282600 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.07 Archaeplastida
Cre07.g314900 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.11 Archaeplastida
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.08 Archaeplastida
GSVIVT01015034001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032750001 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01037636001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.1 Archaeplastida
Gb_06702 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 Archaeplastida
Gb_12810 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.07 Archaeplastida
Gb_16157 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.07 Archaeplastida
LOC_Os01g07080.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.08 Archaeplastida
LOC_Os03g58810.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.1 Archaeplastida
LOC_Os07g33340.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.08 Archaeplastida
MA_10334041g0020 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.02 Archaeplastida
MA_109969g0010 No alias DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis... 0.02 Archaeplastida
MA_7914832g0010 No alias No annotation 0.01 Archaeplastida
Mp5g04780.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.02 Archaeplastida
Mp6g05260.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.1 Archaeplastida
Mp7g12890.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.16 Archaeplastida
Mp8g10290.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.09 Archaeplastida
Pp3c11_510V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Pp3c17_13450V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Archaeplastida
Pp3c1_22540V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Archaeplastida
Pp3c4_14810V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.08 Archaeplastida
Smo104808 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 Archaeplastida
Smo230685 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 Archaeplastida
Solyc02g078880.4.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.04 Archaeplastida
Solyc03g114370.4.1 No alias no hits & (original description: none) 0.16 Archaeplastida
Solyc07g064520.3.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.18 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 294 403
IPR011545 DEAD/DEAH_box_helicase_dom 87 257
IPR025313 DUF4217 445 508
No external refs found!