Zm00001e010722_P005

Description : Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana (sp|f4j9m5|chr12_arath : 460.0)

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0001935 (LandPlants) Phylogenetic Tree(s): OG_05_0001935_tree ,
OG_06_0002288 (SeedPlants) Phylogenetic Tree(s): OG_06_0002288_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e010722_P005
Cluster	HCCA: Cluster_270

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00086p00165640	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
AMTR_s00148p00090060	evm_27.TU.AmTr_v1...	Helicase protein MOM1 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT2G13370	CHR5	chromatin remodeling 5	0.04	Archaeplastida
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
AT2G46020	CHA2, CHR2, BRM, ATBRM	transcription regulatory protein SNF2, putative	0.03	Archaeplastida
AT3G06010	ATCHR12	Homeotic gene regulator	0.03	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.03	Archaeplastida
Cpa\|evm.model.tig00000802.67	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cpa\|evm.model.tig00000983.26	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.01	Archaeplastida
Cpa\|evm.model.tig00020960.24	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cpa\|evm.model.tig00021623.13	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.01	Archaeplastida
Cre03.g179300	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
Cre07.g325700	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.03	Archaeplastida
Cre08.g377200	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
Cre12.g537671	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01012117001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.06	Archaeplastida
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
GSVIVT01017820001	No alias	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
GSVIVT01017821001	No alias	No description available	0.06	Archaeplastida
GSVIVT01017921001	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
GSVIVT01025216001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01026952001	No alias	Chromatin organisation.chromatin remodeling...	0.05	Archaeplastida
GSVIVT01035901001	No alias	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
GSVIVT01037235001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.03	Archaeplastida
Gb_01673	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Gb_15026	No alias	chromatin remodeling factor (Alc)	0.02	Archaeplastida
LOC_Os02g02050.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os05g05230.1	No alias	chromatin remodeling factor (Snf2)	0.06	Archaeplastida
LOC_Os06g01320.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os06g08480.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
LOC_Os07g46590.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	Archaeplastida
MA_102992g0020	No alias	Probable chromatin-remodeling complex ATPase chain...	0.02	Archaeplastida
MA_10436824g0010	No alias	No annotation	0.04	Archaeplastida
MA_137856g0010	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
MA_141135g0010	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
Mp1g17010.1	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Mp3g15030.1	No alias	chromatin remodeling factor (Iswi)	0.03	Archaeplastida
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.04	Archaeplastida
Mp8g17660.1	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Pp3c10_2280V3.1	No alias	chromatin remodeling 4	0.02	Archaeplastida
Pp3c11_18940V3.1	No alias	chromatin-remodeling protein 11	0.04	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.06	Archaeplastida
Pp3c13_19680V3.1	No alias	chromatin remodeling 4	0.04	Archaeplastida
Pp3c14_90V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Archaeplastida
Pp3c18_19045V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.05	Archaeplastida
Pp3c27_3890V3.1	No alias	Homeotic gene regulator	0.03	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.04	Archaeplastida
Pp3c6_10390V3.1	No alias	chromatin remodeling 5	0.02	Archaeplastida
Pp3c7_3340V3.1	No alias	chromatin-remodeling protein 11	0.03	Archaeplastida
Smo102849	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
Smo177985	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo440203	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo440558	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.05	Archaeplastida
Smo440815	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.03	Archaeplastida
Solyc01g067390.4.1	No alias	chromatin remodeling factor (Iswi)	0.02	Archaeplastida
Solyc01g094800.4.1	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Solyc06g010240.3.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc06g054560.3.1	No alias	chromatin remodeling factor (Iswi)	0.04	Archaeplastida
Solyc08g029130.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Solyc12g099910.2.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.07	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Zm00001e036737_P001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003909	DNA ligase activity	IEP	Neighborhood
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	456	584

External Links

No external refs found!

Zm00001e010722_P005

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation