Zm00001e010734_P001


Description : PPR-type mitochondrial ribosome regulatory protein (PNM1)


Gene families : OG0008087 (Archaeplastida) Phylogenetic Tree(s): OG0008087_tree ,
OG_05_0006682 (LandPlants) Phylogenetic Tree(s): OG_05_0006682_tree ,
OG_06_0003761 (SeedPlants) Phylogenetic Tree(s): OG_06_0003761_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010734_P001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT5G60960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G61370 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01008125001 No alias Protein biosynthesis.organelle translation... 0.04 Archaeplastida
LOC_Os07g41260.1 No alias PPR-type mitochondrial ribosome regulatory protein (PNM1) 0.04 Archaeplastida
Solyc03g114920.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PNM1) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 288 334
IPR002885 Pentatricopeptide_repeat 206 256
IPR002885 Pentatricopeptide_repeat 367 391
No external refs found!