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  5. Zm00001e010780_P001

Zm00001e010780_P001


Description : component RPSa of SSU proteome


Gene families : OG0002241 (Archaeplastida) Phylogenetic Tree(s): OG0002241_tree ,
OG_05_0002670 (LandPlants) Phylogenetic Tree(s): OG_05_0002670_tree ,
OG_06_0002731 (SeedPlants) Phylogenetic Tree(s): OG_06_0002731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010780_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00244660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
AMTR_s00041p00084080 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.29 Archaeplastida
AT3G04770 RPSAb 40s ribosomal protein SA B 0.09 Archaeplastida
Cre10.g432800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01016695001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
Gb_02349 No alias component RPSa of SSU proteome 0.07 Archaeplastida
Gb_10091 No alias component RPSa of SSU proteome 0.04 Archaeplastida
LOC_Os03g08440.1 No alias component RPSa of SSU proteome 0.13 Archaeplastida
LOC_Os07g42450.1 No alias component RPSa of SSU proteome 0.28 Archaeplastida
MA_10436984g0020 No alias component RPSa of SSU proteome 0.07 Archaeplastida
MA_112104g0010 No alias component RPSa of SSU proteome 0.17 Archaeplastida
MA_6868827g0010 No alias No annotation 0.03 Archaeplastida
Mp2g26290.1 No alias component RPSa of SSU proteome 0.41 Archaeplastida
Pp3c14_15680V3.1 No alias 40s ribosomal protein SA B 0.02 Archaeplastida
Pp3c14_15700V3.1 No alias 40s ribosomal protein SA B 0.19 Archaeplastida
Pp3c14_17310V3.1 No alias 40s ribosomal protein SA B 0.2 Archaeplastida
Pp3c17_17600V3.1 No alias 40s ribosomal protein SA 0.35 Archaeplastida
Pp3c1_24120V3.1 No alias 40s ribosomal protein SA 0.1 Archaeplastida
Solyc03g019780.4.1 No alias component RPSa of SSU proteome 0.3 Archaeplastida
Solyc06g072120.3.1 No alias component RPSa of SSU proteome 0.28 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 23 117
IPR001865 Ribosomal_S2 122 187
IPR032281 40S_SA_C 207 306
No external refs found!