1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e011272_P001

Zm00001e011272_P001


Description : CFM3-type plastidial RNA splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0001068 (SeedPlants) Phylogenetic Tree(s): OG_06_0001068_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011272_P001
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.04 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.04 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.03 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.07 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.04 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.09 Archaeplastida
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.03 Archaeplastida
Cre14.g630301 No alias No description available 0.01 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.05 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.02 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.09 Archaeplastida
MA_10233916g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.08 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.08 Archaeplastida
MA_8161870g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.07 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.03 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Solyc02g086200.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.05 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 376 457
IPR001890 RNA-binding_CRM 585 671
IPR001890 RNA-binding_CRM 169 252
No external refs found!