AT3G16890 (PPR40)

Aliases : PPR40

Description : pentatricopeptide (PPR) domain protein 40

Gene families : OG0011343 (Archaeplastida) Phylogenetic Tree(s): OG0011343_tree ,
OG_05_0011199 (LandPlants) Phylogenetic Tree(s): OG_05_0011199_tree ,
OG_06_0010465 (SeedPlants) Phylogenetic Tree(s): OG_06_0010465_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16890
Cluster	HCCA: Cluster_194

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00184190	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_40070	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Zm00001e002867_P004	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IMP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0022904	respiratory electron transport chain	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042773	ATP synthesis coupled electron transport	None	Extended
BP	GO:0042775	mitochondrial ATP synthesis coupled electron transport	IMP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
BP	GO:0032204	regulation of telomere maintenance	IEP	Neighborhood
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0080156	mitochondrial mRNA modification	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	424	470
IPR002885	Pentatricopeptide_repeat	563	611
IPR002885	Pentatricopeptide_repeat	216	260
IPR002885	Pentatricopeptide_repeat	493	542
IPR002885	Pentatricopeptide_repeat	183	211

External Links

No external refs found!

AT3G16890 (PPR40)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation