Zm00001e011594_P001

Description : nMAT1/2 type-I mitochondrial RNA splicing factor

Gene families : OG0004888 (Archaeplastida) Phylogenetic Tree(s): OG0004888_tree ,
OG_05_0003570 (LandPlants) Phylogenetic Tree(s): OG_05_0003570_tree ,
OG_06_0003926 (SeedPlants) Phylogenetic Tree(s): OG_06_0003926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e011594_P001
Cluster	HCCA: Cluster_358

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00096p00172010	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
AMTR_s00110p00142760	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
Gb_27973	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	Archaeplastida
MA_52319g0030	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	Archaeplastida
Solyc08g077385.1.1	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR024937	Domain_X	498	592

External Links

No external refs found!