Zm00001e011716_P001

Description : RH3 plastidial RNA basal splicing factor

Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0000974 (LandPlants) Phylogenetic Tree(s): OG_05_0000974_tree ,
OG_06_0005164 (SeedPlants) Phylogenetic Tree(s): OG_06_0005164_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e011716_P001
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00168720	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
AMTR_s00126p00110160	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AT3G22310	PMH1, ATRH9	putative mitochondrial RNA helicase 1	0.04	Archaeplastida
AT5G26742	emb1138	DEAD box RNA helicase (RH3)	0.13	Archaeplastida
Cre17.g727700	No alias	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.02	Archaeplastida
GSVIVT01000821001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01031360001	No alias	RNA processing.organelle machineries.RNA...	0.1	Archaeplastida
Gb_04849	No alias	RH3 plastidial RNA basal splicing factor	0.05	Archaeplastida
Gb_35745	No alias	RH3 plastidial RNA basal splicing factor	0.05	Archaeplastida
Gb_39948	No alias	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.02	Archaeplastida
LOC_Os03g61220.1	No alias	RH3 plastidial RNA basal splicing factor	0.07	Archaeplastida
LOC_Os12g41715.1	No alias	RNA helicase (PMH)	0.03	Archaeplastida
MA_10206082g0010	No alias	RNA helicase (PMH)	0.03	Archaeplastida
MA_10425844g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Mp3g17170.1	No alias	RH3 plastidial RNA basal splicing factor. RNA helicase (PMH)	0.04	Archaeplastida
Pp3c10_20840V3.1	No alias	DEAD box RNA helicase (PRH75)	0.04	Archaeplastida
Pp3c27_1440V3.1	No alias	DEAD box RNA helicase (RH3)	0.03	Archaeplastida
Pp3c2_2520V3.1	No alias	DEAD box RNA helicase (RH3)	0.06	Archaeplastida
Smo10677	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
Smo99603	No alias	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.03	Archaeplastida
Solyc08g042050.3.1	No alias	RH3 plastidial RNA basal splicing factor	0.07	Archaeplastida
Solyc12g006320.3.1	No alias	RNA helicase (PMH)	0.02	Archaeplastida
Zm00001e003219_P001	No alias	RNA helicase (PMH)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0009982	pseudouridine synthase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016866	intramolecular transferase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0031072	heat shock protein binding	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
MF	GO:0035596	methylthiotransferase activity	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0050497	transferase activity, transferring alkylthio groups	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Neighborhood
MF	GO:0051920	peroxiredoxin activity	IEP	Neighborhood
BP	GO:0052646	alditol phosphate metabolic process	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	112	284
IPR001650	Helicase_C	321	429
IPR001878	Znf_CCHC	728	744
IPR012562	GUCT	516	616

External Links

No external refs found!

Zm00001e011716_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation