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  5. Zm00001e011788_P002

Zm00001e011788_P002


Description : E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica (sp|q6avn2|sirp1_orysj : 164.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0007405 (LandPlants) Phylogenetic Tree(s): OG_05_0007405_tree ,
OG_06_0003946 (SeedPlants) Phylogenetic Tree(s): OG_06_0003946_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011788_P002
Cluster HCCA: Cluster_304

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00250160 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G55530 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G10815 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G26400 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G64920 CIP8 COP1-interacting protein 8 0.03 Archaeplastida
LOC_Os01g16950.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
LOC_Os03g59760.1 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os06g01200.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 Archaeplastida
LOC_Os07g43740.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c1_42450V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c3_13100V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Solyc05g007895.1.1 No alias E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc09g074460.3.1 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e004520_P001 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0043085 positive regulation of catalytic activity IEP Neighborhood
BP GO:0044093 positive regulation of molecular function IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 253 294
No external refs found!