1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e011859_P001

Zm00001e011859_P001


Description : linker histone (H1)


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011859_P001
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.09 Archaeplastida
AMTR_s00185p00055680 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.03 Archaeplastida
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.06 Archaeplastida
Cpa|evm.model.tig00020780.71 No alias No description available 0.01 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.18 Archaeplastida
GSVIVT01018114001 No alias Chromatin organisation.histones.H1 linker histone 0.02 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.05 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.29 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.22 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.22 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.06 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.07 Archaeplastida
MA_10436125g0010 No alias linker histone (H1) 0.06 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.03 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.09 Archaeplastida
MA_5293931g0010 No alias No annotation 0.03 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.25 Archaeplastida
MA_6251451g0010 No alias No annotation 0.02 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.18 Archaeplastida
Pp3c18_14270V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.02 Archaeplastida
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.04 Archaeplastida
Solyc03g119130.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.11 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.12 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 50 117
No external refs found!