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  5. Zm00001e012144_P001

Zm00001e012144_P001


Description : histone (H2A)


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012144_P001
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.12 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.05 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.07 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.04 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.07 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.05 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.04 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.12 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.11 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_06384 No alias histone (H2A) 0.14 Archaeplastida
Gb_07070 No alias histone (H2A) 0.08 Archaeplastida
Gb_25326 No alias histone (H2A) 0.05 Archaeplastida
Gb_29778 No alias histone (H2A) 0.04 Archaeplastida
Gb_34906 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.06 Archaeplastida
LOC_Os05g38640.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.08 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.04 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.05 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.06 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.06 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.05 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.03 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.09 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.04 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.05 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.12 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.11 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.1 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.14 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.11 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 15 92
IPR032454 Histone_H2A_C 95 127
No external refs found!