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  5. Zm00001e012229_P001

Zm00001e012229_P001


Description : component PININ of RNA quality control Exon Junction complex


Gene families : OG0005056 (Archaeplastida) Phylogenetic Tree(s): OG0005056_tree ,
OG_05_0005081 (LandPlants) Phylogenetic Tree(s): OG_05_0005081_tree ,
OG_06_0005233 (SeedPlants) Phylogenetic Tree(s): OG_06_0005233_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012229_P001
Cluster HCCA: Cluster_313

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00173p00035440 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
AT1G15200 No alias protein-protein interaction regulator family protein 0.04 Archaeplastida
GSVIVT01029689001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
Gb_25266 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_25267 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_25268 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_25269 No alias component PININ of RNA quality control Exon Junction complex 0.02 Archaeplastida
LOC_Os03g49520.1 No alias component PININ of RNA quality control Exon Junction complex 0.07 Archaeplastida
MA_49744g0010 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
MA_503521g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp4g01130.1 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Smo410528 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
Solyc01g104560.3.1 No alias component PININ of RNA quality control Exon Junction complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008193 tRNA guanylyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006786 Pinin_SDK_MemA 154 282
No external refs found!