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  5. Zm00001e012505_P001

Zm00001e012505_P001


Description : mRNA-binding regulatory factor (RBP45/47)


Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0000471 (LandPlants) Phylogenetic Tree(s): OG_05_0000471_tree ,
OG_06_0000318 (SeedPlants) Phylogenetic Tree(s): OG_06_0000318_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012505_P001
Cluster HCCA: Cluster_294

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00157p00080130 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.02 Archaeplastida
AT1G47500 ATRBP47C', RBP47C' RNA-binding protein 47C' 0.15 Archaeplastida
AT1G49600 RBP47A, ATRBP47A RNA-binding protein 47A 0.03 Archaeplastida
AT5G54900 ATRBP45A, RBP45A RNA-binding protein 45A 0.04 Archaeplastida
LOC_Os02g35950.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.06 Archaeplastida
LOC_Os08g09100.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.05 Archaeplastida
Pp3c12_10910V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c12_10960V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c4_13300V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Smo100454 No alias Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo80061 No alias Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.02 Archaeplastida
Solyc01g108500.4.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Solyc03g031720.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
Solyc10g050860.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 72 138
IPR000504 RRM_dom 273 337
IPR000504 RRM_dom 165 235
No external refs found!