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  5. Zm00001e012687_P001

Zm00001e012687_P001


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 197.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012687_P001
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 evm_27.TU.AmTr_v1... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00153p00047660 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.03 Archaeplastida
AMTR_s00153p00050640 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.02 Archaeplastida
AT1G07090 LSH6 Protein of unknown function (DUF640) 0.03 Archaeplastida
AT2G42610 LSH10 Protein of unknown function (DUF640) 0.03 Archaeplastida
AT3G04510 LSH2 Protein of unknown function (DUF640) 0.03 Archaeplastida
AT3G23290 LSH4 No description available 0.06 Archaeplastida
AT4G18610 LSH9 Protein of unknown function (DUF640) 0.02 Archaeplastida
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.04 Archaeplastida
GSVIVT01020708001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.06 Archaeplastida
Gb_15426 No alias Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Gb_36840 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os01g61310.1 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
LOC_Os02g07030.1 No alias Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.09 Archaeplastida
LOC_Os02g41460.1 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.05 Archaeplastida
LOC_Os02g56610.1 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
LOC_Os04g43580.2 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os05g28040.1 No alias Protein G1-like9 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
LOC_Os05g39500.1 No alias Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_12926g0010 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
MA_211369g0010 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Mp2g00330.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 Archaeplastida
Pp3c20_17990V3.1 No alias Protein of unknown function (DUF640) 0.02 Archaeplastida
Solyc02g069510.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.01 Archaeplastida
Solyc05g055020.4.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... 0.08 Archaeplastida
Solyc06g083860.2.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Solyc07g150147.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.05 Archaeplastida
Solyc09g025280.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.05 Archaeplastida
Solyc10g007310.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Solyc10g008000.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.05 Archaeplastida
Solyc12g014260.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Zm00001e013711_P001 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Zm00001e016177_P002 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Zm00001e023639_P001 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 Archaeplastida
Zm00001e027283_P001 No alias Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Zm00001e032784_P001 No alias Protein G1 OS=Oryza sativa subsp. japonica... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 41 157
No external refs found!