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Description : component CPSF30/Yth1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex
Gene families : OG0002163 (Archaeplastida) Phylogenetic Tree(s): OG0002163_tree ,
OG_05_0005447 (LandPlants) Phylogenetic Tree(s): OG_05_0005447_tree ,
OG_06_0005316 (SeedPlants) Phylogenetic Tree(s): OG_06_0005316_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e012971_P001 | |
| Cluster | HCCA: Cluster_313 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00155p00079840 | evm_27.TU.AmTr_v1... | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.02 | Archaeplastida | |
| GSVIVT01021617001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.03 | Archaeplastida | |
| LOC_Os06g46400.1 | No alias | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.06 | Archaeplastida | |
| MA_10432729g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_61605g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Mp6g15200.1 | No alias | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.04 | Archaeplastida | |
| Solyc02g021760.3.1 | No alias | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.06 | Archaeplastida | |
| Solyc08g007760.3.1 | No alias | Zinc finger CCCH domain-containing protein 45 OS=Oryza... | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source | |
|---|---|---|---|---|---|
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood | |
| BP | GO:0001510 | RNA methylation | IEP | Neighborhood | |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood | |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood | |
| CC | GO:0005634 | nucleus | IEP | Neighborhood | |
| CC | GO:0005667 | transcription factor complex | IEP | Neighborhood | |
| CC | GO:0005875 | microtubule associated complex | IEP | Neighborhood | |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood | |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood | |
| BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Neighborhood | |
| BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Neighborhood | |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood | |
| BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood | |
| BP | GO:0007051 | spindle organization | IEP | Neighborhood | |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Neighborhood | |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood | |
| BP | GO:0009966 | regulation of signal transduction | IEP | Neighborhood | |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood | |
| BP | GO:0010646 | regulation of cell communication | IEP | Neighborhood | |
| MF | GO:0015098 | molybdate ion transmembrane transporter activity | IEP | Neighborhood | |
| BP | GO:0015689 | molybdate ion transport | IEP | Neighborhood | |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood | |
| BP | GO:0016556 | mRNA modification | IEP | Neighborhood | |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Neighborhood | |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood | |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood | |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood | |
| BP | GO:0022402 | cell cycle process | IEP | Neighborhood | |
| BP | GO:0023051 | regulation of signaling | IEP | Neighborhood | |
| CC | GO:0030014 | CCR4-NOT complex | IEP | Neighborhood | |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood | |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood | |
| MF | GO:0035299 | inositol pentakisphosphate 2-kinase activity | IEP | Neighborhood | |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood | |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood | |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood | |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood | |
| CC | GO:0044464 | cell part | IEP | Neighborhood | |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood | |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Neighborhood | |
| BP | GO:0051225 | spindle assembly | IEP | Neighborhood | |
| CC | GO:0070652 | HAUS complex | IEP | Neighborhood | |
| BP | GO:0070925 | organelle assembly | IEP | Neighborhood | |
| BP | GO:0080009 | mRNA methylation | IEP | Neighborhood | |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood | |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood | |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood | |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007275 | YTH_domain | 240 | 374 |
| No external refs found! |