Description : C2H2 zinc finger transcription factor. component SERRATE of DCL1-HYL1 miRNA biogenesis complex
Gene families : OG0002437 (Archaeplastida) Phylogenetic Tree(s): OG0002437_tree ,
OG_05_0003524 (LandPlants) Phylogenetic Tree(s): OG_05_0003524_tree ,
OG_06_0004189 (SeedPlants) Phylogenetic Tree(s): OG_06_0004189_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e013155_P002 | |
Cluster | HCCA: Cluster_313 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G27100 | SE | C2H2 zinc-finger protein SERRATE (SE) | 0.03 | Archaeplastida | |
Cre13.g575900 | No alias | RNA biosynthesis.transcriptional activation.C2H2 zinc... | 0.03 | Archaeplastida | |
GSVIVT01027348001 | No alias | RNA biosynthesis.transcriptional activation.C2H2 zinc... | 0.07 | Archaeplastida | |
GSVIVT01037454001 | No alias | RNA biosynthesis.transcriptional activation.C2H2 zinc... | 0.03 | Archaeplastida | |
Gb_07578 | No alias | C2H2 zinc finger transcription factor. component SERRATE... | 0.01 | Archaeplastida | |
LOC_Os08g40560.1 | No alias | C2H2 zinc finger transcription factor. component SERRATE... | 0.02 | Archaeplastida | |
MA_10426519g0010 | No alias | C2H2 zinc finger transcription factor. component SERRATE... | 0.05 | Archaeplastida | |
Pp3c16_11390V3.1 | No alias | C2H2 zinc-finger protein SERRATE (SE) | 0.03 | Archaeplastida | |
Pp3c25_7680V3.1 | No alias | C2H2 zinc-finger protein SERRATE (SE) | 0.02 | Archaeplastida | |
Solyc01g009090.3.1 | No alias | C2H2 zinc finger transcription factor. component SERRATE... | 0.04 | Archaeplastida | |
Zm00001e021924_P001 | No alias | C2H2 zinc finger transcription factor. component SERRATE... | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006888 | ER to Golgi vesicle-mediated transport | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
CC | GO:0016592 | mediator complex | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
CC | GO:0030127 | COPII vesicle coat | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
CC | GO:0044445 | cytosolic part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
CC | GO:0090730 | Las1 complex | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
CC | GO:1902555 | endoribonuclease complex | IEP | Neighborhood |
CC | GO:1902911 | protein kinase complex | IEP | Neighborhood |
CC | GO:1905348 | endonuclease complex | IEP | Neighborhood |
CC | GO:1905354 | exoribonuclease complex | IEP | Neighborhood |
No external refs found! |