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  5. Zm00001e013495_P001

Zm00001e013495_P001


Description : Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana (sp|o81908|ppr2_arath : 398.0)


Gene families : OG0009137 (Archaeplastida) Phylogenetic Tree(s): OG0009137_tree ,
OG_05_0008015 (LandPlants) Phylogenetic Tree(s): OG_05_0008015_tree ,
OG_06_0005310 (SeedPlants) Phylogenetic Tree(s): OG_06_0005310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013495_P001
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00074160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02060,... 0.02 Archaeplastida
AT1G02060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01031674001 No alias Pentatricopeptide repeat-containing protein At1g02060,... 0.02 Archaeplastida
LOC_Os02g02950.1 No alias Pentatricopeptide repeat-containing protein At1g02060,... 0.05 Archaeplastida
Solyc03g095200.1.1 No alias Pentatricopeptide repeat-containing protein At1g02060,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 151 181
IPR002885 Pentatricopeptide_repeat 377 404
IPR002885 Pentatricopeptide_repeat 553 575
IPR002885 Pentatricopeptide_repeat 193 242
IPR002885 Pentatricopeptide_repeat 260 308
IPR002885 Pentatricopeptide_repeat 407 455
No external refs found!