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  5. AT3G18900

AT3G18900


Description : unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.3); Has 1466 Blast hits to 1426 proteins in 93 species: Archae - 0; Bacteria - 91; Metazoa - 23; Fungi - 0; Plants - 1310; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).


Gene families : OG0000857 (Archaeplastida) Phylogenetic Tree(s): OG0000857_tree ,
OG_05_0000513 (LandPlants) Phylogenetic Tree(s): OG_05_0000513_tree ,
OG_06_0042155 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G18900
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031903001 No alias No description available 0.04 Archaeplastida
Pp3c1_4150V3.1 No alias Protein of unknown function, DUF547 0.02 Archaeplastida
Solyc01g109270.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g051030.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e002322_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e005808_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e034560_P003 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004707 MAP kinase activity IEP Neighborhood
BP GO:0006949 syncytium formation IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0009828 plant-type cell wall loosening IEP Neighborhood
BP GO:0010065 primary meristem tissue development IEP Neighborhood
BP GO:0010067 procambium histogenesis IEP Neighborhood
BP GO:0048507 meristem development IEP Neighborhood
BP GO:0048508 embryonic meristem development IEP Neighborhood
InterPro domains Description Start Stop
IPR006869 DUF547 321 450
IPR025757 MIP1_Leuzipper 80 136
No external refs found!