- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Plasma membrane-associated cation-binding protein 1 OS=Arabidopsis thaliana (sp|q96262|pcap1_arath : 92.8)
Gene families : OG0004028 (Archaeplastida) Phylogenetic Tree(s): OG0004028_tree ,
OG_05_0002800 (LandPlants) Phylogenetic Tree(s): OG_05_0002800_tree ,
OG_06_0003282 (SeedPlants) Phylogenetic Tree(s): OG_06_0003282_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e014131_P002 | |
| Cluster | HCCA: Cluster_111 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G20260 | PCAP1, ATPCAP1 | plasma-membrane associated cation-binding protein 1 | 0.03 | Archaeplastida | |
| GSVIVT01001340001 | No alias | Plasma membrane-associated cation-binding protein 1... | 0.02 | Archaeplastida | |
| LOC_Os02g18410.1 | No alias | Plasma membrane-associated cation-binding protein 1... | 0.15 | Archaeplastida | |
| MA_15276g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Mp4g05850.1 | No alias | Plasma membrane-associated cation-binding protein 1... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0046658 | anchored component of plasma membrane | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004650 | polygalacturonase activity | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR008469 | DREPP | 1 | 215 |
| No external refs found! |